Hp XC System 2.x Software Uživatelský manuál Strana 128
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Hodnocené. / 5. Na základě hodnocení zákazníků
$ mpi90 [options] file ...
/opt/mlib/[intel_7.1\intel_8.0]/hpmpi_2.1/lib/64/libscalapack.a \
-openmp
$ mpicc [options] file ...
/opt/mlib/[intel_7.1\intel_8.0]/hpmpi_2.1/lib/64/libscalapack.a \
-openmp
9.2.6.4 Linking SuperLU_DIST
For programs that link S uperLU_D IST, you can specify the entire path of the library file on the
compiler command line. You can use the fo llowing commands to link SuperLU_DIST:
$ mpi90 [options] file ...
/opt/mlib/[intel_7.1\intel_8.0]/hpmpi_2.1/lib/64/libsuperlu_dist.a \
-openmp
$ mpicc [options] file ...
/opt/mlib/[intel_7.1\intel_8.0]/hpmpi_2.1/lib/64/libsuperlu_dist.a \
-openmp
9.2.7 Licensing
License files have been provided with HP MLIB. If th e license is exp ired, contact your system
administrator. HP MLIB will not function without a valid license. A user demonstration mode
is not provid ed.
9.2.8 MLIB Man pages
MLIB manpages are supplied with the MLI B softw are and are available on th e HP XC by
invoking the man command with an MLIB comm and name.
9.3 HP MLIB for the HP XC4000 Platform
The information in this section describes how to use HP MLIB Version 1.5 in the HP XC
environment on the HP XC40 00 platform.
HP MLIB for the H P XC4000 platform suppo rts VECLIB, LAPACK, ScaLAPACK,
SuperLU_DIST, and MPI parallelism. This release does not suppo rt quad precision sparse
solver functionality on PGI/X86-64.
For the latest inform ation about this release of HP MLIB, refer to the HP MLIB release notes.
HP MLIB directory information is located in the /opt/mlib/README file.
This section concentrates on how to quickly get started using HP MLIB.
9.3.1 Platform Sup port
HP MLIB V1.5 for HP XC4000 su ppo rts 64-bit addressing. This release does not support quad
precision sparse solver functionality on PGI/X86-64.
9.3.2 Library Support
HP MLIB V1.5 for XC4000 is a vailable as archive and shared libraries. All libraries are
installed at /opt/mlib/pgi_5.1/hpmpi_2.1/lib/64. This release of HP XC MLIB
has the following components: VECLIB, LAPACK, ScaLAPA CK, and Sup erLU_ DIST.
VECLIB LAPACK ScaLAPACK SuperLU_DIST
libveclib.a liblapack.a libscalapack.a libsuperlu_dist
.a
libveclib.so liblapack.so libscalapack.so libsuperlu_dist.so
Note: .a = archive
, .so = shared, xxx8.x = int 8 (all integer values using 64 bits)
9-4 Using HP MLIB
- HP XC System Software 1
- Contents 3
- 3 Developing Applications 4
- 4 Debugging Applications 5
- 5 Tuning Applications 5
- 6UsingSLURM 5
- 8UsingHP-MPI 6
- 7 Using LSF 6
- 9UsingHPMLIB 7
- 10 Advanced Topics 8
- AExamples 8
- About This Document 11
- HP XC Inform ation 12
- For M ore Information 13
- Supplementary Information 13
- Manpages 14
- Related Information 15
- Typographical Conventions 16
- HP Encourages Your Comments 17
- 1.1 System Architecture 19
- 1.1.3 Storage and I/O 20
- 1.1.4 File System 20
- 1.2 User Environment 22
- 1.3.1 Parallel Applications 23
- 1.3.2 Serial Applications 23
- 1.4 Run-Time E nvironment 24
- 1.4.4 HP-MPI 25
- Using the System 27
- 2.2.1 Notes on Modulefiles 28
- 2.2.2 Supplied Modulefiles 29
- 2.2.6 Loading a Modulefile 30
- 2.2.7 Unloading a M odulefile 31
- 2.2.8 Modulefile Conflicts 31
- 2.2.9 Creating a Mod u lefile 32
- 2.3.1 Introduction 33
- 2.3.5 Launching Jobs 34
- $ man sinfo 39
- $ man -k keyword 39
- Using the System 2-13 39
- Developing Applications 41
- 3.2 Using Compilers 42
- 3.4 Interrupting a Job 43
- 3-4 Developing Applications 44
- Developing Applications 3-5 45
- 3-6 Developing Applications 46
- Developing Applications 3-7 47
- $ module load mpi 48
- $ mpicc -o mycode hello.c 48
- $ mpif90 -o mycode hello.f 48
- 3-8 Developing Applications 48
- 3.8 Developing Libraries 49
- 3.9 Advanced To pics 50
- 3-14 Deve loping Applications 54
- Developing Applications 3-15 55
- Debugging Applications 57
- 4-2 D ebugging Applications 58
- $ totalview 60
- 4-4 D ebugging Applications 60
- Debugging Applications 4-5 61
- 4-6 D ebugging Applications 62
- -verbosity %V %F" 63
- Debugging Applications 4-7 63
- 4-8 D ebugging Applications 64
- Etnus TotalView Version# 65
- Debugging Applications 4-9 65
- $ mpirun -srun -n2 Psimple 66
- 4-10 Debugging Applications 66
- $ squeue 67
- $ scancel --user username 67
- Debugging Applications 4-11 67
- Tuning Applications 69
- Using SLURM 71
- $ srun -N 16 -b myscript.sh 73
- $ srun -A -N 4 myscript.sh 73
- $ srun -a 6543 -j 73
- Using SLURM 6-3 73
- 6.4.2 srun Signal Handling 74
- 6.4.3 srun Run-Mode Options 74
- Using SLURM 6-5 75
- 6-6 Using SLURM 76
- 6.4.5 srun Control Options 77
- 6.4.6 srun I/O Options 78
- Using SLURM 6-9 79
- 6.4.7 srun Constraint Options 80
- Using SLURM 6-11 81
- 6.4.9 Using srun with HP-MPI 82
- 6.4.10 Using srun with LSF 82
- 6.8 Job Accounting 84
- 6.9 Fault Tolerance 84
- 6.10 Security 84
- Using LSF 85
- 7.1.2 Topology Support 86
- 7.1.3 Notes on LSF-HPC 87
- SLURM_JOBID=53 89
- SLURM_NPROCS=4 89
- 7-6 Using LSF 90
- 7.3.1 Getting Status of LSF 91
- $ bhosts 92
- 7-8 Using LSF 92
- 7.4 Submitting Jobs 93
- 7.4.3 Submitting a Serial Job 97
- Using LSF 7-17 101
- 7-18 Using LSF 102
- Using HP-MPI 111
- 8.3.3 Using srun with HP-MPI 114
- 8.3.4 Using LSF and HP-MPI 116
- 8.3.5 MPI Versioning 117
- 8.6 Truncated Messages 118
- 8.5 32-Bit B uilds on XC4000 118
- Using HP-MPI 8-9 119
- 8.9 Environment Variables 120
- 8.9.5 MPI_PIN_PERCENTAGE 121
- 8.9.6 MPI_PAGE_ALIGN_MEM 121
- 8.9.7 MPI_MAX_WINDOW 121
- 8.9.8 MPI_ELANLOCK 121
- 8.9.9 MPI_USE_LIBELAN 121
- 8.9.10 MPI_USE_LIBELAN_SUB 122
- Work-arounds 124
- Using HP MLIB 125
- 9.1.2 MLIB and Module Files 126
- 9.2.1 Platform Sup port 126
- 9.2.2 Library Support 126
- 9.2.3 MPI Parallelism 126
- 9.2.4 Modulefiles and MLIB 127
- 9.2.6 Compiling and Linking 127
- 9.2.7 Licensing 128
- 9.2.8 MLIB Man pages 128
- 9.3.1 Platform Sup port 128
- 9.3.2 Library Support 128
- 9.3.3 MPI Parallelism 129
- 9.3.4 Modulefiles and MLIB 129
- 9.3.5 Compiling and Linking 129
- 9.3.6 Licensing 130
- 9.3.7 MLIB Man pages 130
- Advanced Topics 131
- Examples 135
- $ lshosts 140
- Show the environment: 142
- Run the job: 142
- View the running job: 142
- View the finished job: 142
- Examples A-9 143
- Glossary 145
- Glossary-2 146
- Glossary-3 147
- Glossary-4 148
- Glossary-5 149
- Glossary-6 150
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